Ph.D., Computer Science, VU University Amsterdam and Centrum Wiskunde & Informatica (CWI), 2015
M.S., Bioinformatics, VU University Amsterdam, 2010
M.S., Computer Science and Engineering, Eindhoven University of Technology, 2009
B.S., Computer Science and Engineering, Eindhoven University of Technology, 2006
Postdoc, Princeton University, Department of Computer Science, 2016-2017
Postdoc, Brown University, Department of Computer Science, 2014-2016
Major Consulting Activities
Medley Genomics, Providence, RI, 2017
Selected Articles in Journals
M. El-Kebir, L. Oesper, H. Acheson-Field, B. J. Raphael. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data, Bioinformatics (Special Issue: Proceedings of ISMB), 31(12):i62-i70, 2015.
The Computational Pan-Genomics Consortium. Computational pan-genomics: sta- tus, promises and challenges, Briefings in Bioinformatics, bbw089, 2016.
M. El-Kebir, G. Satas, L. Oesper, B.J. Raphael. Inferring the Mutational History of a Tumor using Multi-State Perfect Phylogeny Mixtures, Cell Systems, 3(1):43-53, 2016.
S. Zaccaria, M. El-Kebir, G. W. Klau, B. J. Raphael. The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-Sample Bulk Sequencing Tumor Data. RECOMB 2017, Annual International Conference on Research in Computational Molecular Biology, Hong Kong, China, May 3-7, 2017.
M. El-Kebir, B.J. Raphael, R. Shamir, R. Sharan, S. Zaccaria, M. Zehavi, R. Zeira. Copy-Number Evolution Problems: Complexity and Algorithms. WABI 2016, Workshop on Algorithms in Bioinformatics, Aarhus, Denmark, August 22-24 2016.
M. El-Kebir, G. Satas, L. Oesper, B. J. Raphael. Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. RECOMB 2016, Annual International Conference on Research in Computational Molecular Biology, Santa Monica, CA, April 18-21 2016.
M. El-Kebir, L. Oesper, H. Acheson-Field, B. J. Raphael. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. ISMB 2015, Annual International Conference on Intelligent Systems for Molecular Biology, Dublin, Ireland, July 10-14, 2015.
Summarizing the Solution Space in Tumor Phylogeny Inference by Multiple Consensus Trees. Aguse, Qi and El-Kebir. ISMB 2019. To appear.
Benjamin J. Raphael, Mohammed El-Kebir, Gryte Satas. Phylogeny tree generation from mixed samples. Pending. US20180285519A1
Association for Computing Machinery (ACM), 2018 - present
American Association for the Advancement of Science (AAAS), 2018 - present
Institute of Electrical and Electronics Engineers (IEEE), 2018 - present
International Society for Computational Biology (ISCB), 2012 - present
Other Outside Service
Reviewer for several journals (Nature Communications, PLoS One/CB, Bioinformatics, Genome Research, Bioinformatics, BMC Bioinformatics, etc.)
Program Committee Member: European Conference on Computational Biology (ECCB, 2016)
Program Committee Member: Computational Intelligence methods for Bioinformatics and Biostatistics (CIBB, 2019, 2017)
Program Committee Member: ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB, 2019, 2018)
Program Committee Member: International Symposium on Mathmetical and Computational Oncology (ISMCO, 2019)
Program Committee Member: Great Lakes Bioinformatics Conference (GLBIO, 2019)
Program Committee Member: Workshop on Algorithms in Biology (WABI, 2019)
Program Committee Member: RECOMB-Computational Cancer Biology, (RECOMB-CCB, 2019)
Program Committee Member: Intelligent Systems in Molecular Biology/European Conference on Computational Biology, (ISMB/ECCB, 2019)
Young Investigator Award by Netherlands Bioinformatics and Systems Biology research school (2015)
Honorable Mention for Best Paper Award at 4th Symposium on Biological Data Visualization (2014)